Package: sapfluxnetr 0.1.4
Victor Granda
sapfluxnetr: Working with 'Sapfluxnet' Project Data
Access, modify, aggregate and plot data from the 'Sapfluxnet' project (<http://sapfluxnet.creaf.cat>), the first global database of sap flow measurements.
Authors:
sapfluxnetr_0.1.4.tar.gz
sapfluxnetr_0.1.4.zip(r-4.5)sapfluxnetr_0.1.4.zip(r-4.4)sapfluxnetr_0.1.4.zip(r-4.3)
sapfluxnetr_0.1.4.tgz(r-4.4-any)sapfluxnetr_0.1.4.tgz(r-4.3-any)
sapfluxnetr_0.1.4.tar.gz(r-4.5-noble)sapfluxnetr_0.1.4.tar.gz(r-4.4-noble)
sapfluxnetr_0.1.4.tgz(r-4.4-emscripten)sapfluxnetr_0.1.4.tgz(r-4.3-emscripten)
sapfluxnetr.pdf |sapfluxnetr.html✨
sapfluxnetr/json (API)
NEWS
| # Install 'sapfluxnetr' in R: |
| install.packages('sapfluxnetr', repos = c('https://sapfluxnet.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sapfluxnet/sapfluxnetr/issues
- ARG_MAZ - ARG_MAZ sapfluxnet site
- ARG_TRE - ARG_TRE sapfluxnet site
- AUS_CAN_ST2_MIX - AUS_CAN_ST2_MIX sapfluxnet site
- sfn_metadata_ex - Sfn_metadata cache file for example data
Last updated 2 years agofrom:a09141f653. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 12 2024 |
| R-4.5-win | NOTE | Nov 12 2024 |
| R-4.5-linux | NOTE | Nov 12 2024 |
| R-4.4-win | NOTE | Nov 12 2024 |
| R-4.4-mac | NOTE | Nov 12 2024 |
| R-4.3-win | NOTE | Nov 12 2024 |
| R-4.3-mac | NOTE | Nov 12 2024 |
Exports:%>%daily_metricsdata_coveragedaylight_metricsdescribe_md_variablediurnal_centroidfilter_sites_by_mdget_env_dataget_env_data<-get_env_flagsget_env_flags<-get_env_mdget_env_md<-get_plant_mdget_plant_md<-get_sapf_dataget_sapf_data<-get_sapf_flagsget_sapf_flags<-get_si_codeget_si_code<-get_site_mdget_site_md<-get_solar_timestampget_solar_timestamp<-get_species_mdget_species_md<-get_stand_mdget_stand_md<-get_timestampget_timestamp<-get_timezoneinitializemetrics_tidyfiermidday_metricsmonthly_metricsnightly_metricspredawn_metricsread_sfn_dataread_sfn_metadatasfn_datasfn_data_multisfn_filtersfn_metricssfn_mutatesfn_mutate_atsfn_plotsfn_sites_in_foldersfn_vars_to_filtershowsummarise_by_period
Dependencies:assertthatclicodetoolscolorspacecpp11digestdplyrfansifarverfurrrfuturegenericsggplot2globalsgluegtableisobandlabelinglatticelifecyclelistenvlubridatemagrittrMASSMatrixmgcvmunsellnlmeparallellypillarpkgconfigpurrrR6RColorBrewerrlangscalesstringistringrtibbletidyrtidyselecttimechangeutf8vctrsviridisLitewithr
Custom aggregation
Rendered fromcustom-aggregation.Rmdusingknitr::rmarkdownon Nov 12 2024.Last update: 2021-11-19
Started: 2018-04-05
Data Flags
Rendered fromdata-flags.Rmdusingknitr::rmarkdownon Nov 12 2024.Last update: 2021-11-19
Started: 2018-04-05
Memory and Parallelization
Rendered frommemory-and-parallelization.Rmdusingknitr::rmarkdownon Nov 12 2024.Last update: 2021-11-19
Started: 2018-08-27
Metadata and Data units
Rendered frommetadata-and-data-units.Rmdusingknitr::rmarkdownon Nov 12 2024.Last update: 2021-11-19
Started: 2018-11-18
sapfluxnetr (Not So) Quick Guide
Rendered fromsapfluxnetr-quick-guide.Rmdusingknitr::rmarkdownon Nov 12 2024.Last update: 2021-11-19
Started: 2018-04-05
sfn_data classes
Rendered fromsfn-data-classes.Rmdusingknitr::rmarkdownon Nov 12 2024.Last update: 2023-01-24
Started: 2018-04-05
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Reexporting the pipe operator | %>% |
| ARG_MAZ sapfluxnet site | ARG_MAZ |
| ARG_TRE sapfluxnet site | ARG_TRE |
| AUS_CAN_ST2_MIX sapfluxnet site | AUS_CAN_ST2_MIX |
| data coverage | data_coverage |
| Detailed description of metadata variables | describe_md_variable |
| Diurnal centroid calculation | diurnal_centroid |
| Filter the sites by metadata variable values | filter_sites_by_md |
| get the timezone of the site | get_timezone |
| Initialize method for sfn_data multi | initialize,sfn_data_multi-method |
| Initialize method for sfn_data | initialize,sfn_data-method |
| Complete metrics wrappers | daily_metrics daylight_metrics metrics midday_metrics monthly_metrics nightly_metrics predawn_metrics |
| Build a tidy data frame from the metrics results nested list | metrics_tidyfier |
| Normalized diurnal centroid calculation | norm_diurnal_centroid |
| Read sfn_data from disk | read_sfn_data |
| Read and combine all metadata | read_sfn_metadata |
| Validity method for sfn_data_multi class | sfn_data_multi_validity |
| S4 class for sapfluxnet multi-site data | sfn_data_multi sfn_data_multi-class |
| Validity method for sfn_data class | sfn_data_validity |
| S4 class for sapfluxnet site data | sfn_data sfn_data-class |
| Filter sfn_data by variable/s value | sfn_filter |
| sfn_data custom get generics | get_env_data get_env_flags get_env_md get_plant_md get_sapf_data get_sapf_flags get_site_md get_si_code get_solar_timestamp get_species_md get_stand_md get_timestamp sfn_get_generics |
| sfn_data get methods | get_env_data,sfn_data-method get_env_flags,sfn_data-method get_env_md,sfn_data-method get_plant_md,sfn_data-method get_sapf_data,sfn_data-method get_sapf_flags,sfn_data-method get_site_md,sfn_data-method get_si_code,sfn_data-method get_solar_timestamp,sfn_data-method get_species_md,sfn_data-method get_stand_md,sfn_data-method get_timestamp,sfn_data-method sfn_get_methods |
| sfn_metadata cache file for example data (ARG_MAZ, ARG_TRE and AUS_CAN_ST2_MIX) | sfn_metadata_ex |
| Metrics summary function | sfn_metrics |
| sfn_data_multi get methods | get_env_data,sfn_data_multi-method get_env_flags,sfn_data_multi-method get_env_md,sfn_data_multi-method get_plant_md,sfn_data_multi-method get_sapf_data,sfn_data_multi-method get_sapf_flags,sfn_data_multi-method get_site_md,sfn_data_multi-method get_si_code,sfn_data_multi-method get_solar_timestamp,sfn_data_multi-method get_species_md,sfn_data_multi-method get_stand_md,sfn_data_multi-method get_timestamp,sfn_data_multi-method sfn_multi_get_methods |
| Mutate variables by function | sfn_mutate |
| Mutate selected columns by function | sfn_mutate_at |
| plot method for sfn_data class | sfn_plot |
| sfn_data replacement generics | get_env_data<- get_env_flags<- get_env_md<- get_plant_md<- get_sapf_data<- get_sapf_flags<- get_site_md<- get_si_code<- get_solar_timestamp<- get_species_md<- get_stand_md<- get_timestamp<- sfn_replacement_generics |
| sfn_data replacement methods | get_env_data<-,sfn_data-method get_env_flags<-,sfn_data-method get_env_md<-,sfn_data-method get_plant_md<-,sfn_data-method get_sapf_data<-,sfn_data-method get_sapf_flags<-,sfn_data-method get_site_md<-,sfn_data-method get_si_code<-,sfn_data-method get_solar_timestamp<-,sfn_data-method get_species_md<-,sfn_data-method get_stand_md<-,sfn_data-method get_timestamp<-,sfn_data-method sfn_replacement_methods |
| list available sites in a db folder | sfn_sites_in_folder |
| List all variables that can be used to filter sites | sfn_vars_to_filter |
| Show method for sfn_data_multi | show,sfn_data_multi-method |
| Show method for sfn_data | show,sfn_data-method |
| Summaries by period | summarise_by_period |
