Package: sapfluxnetr 0.1.4

Victor Granda

sapfluxnetr: Working with 'Sapfluxnet' Project Data

Access, modify, aggregate and plot data from the 'Sapfluxnet' project (<http://sapfluxnet.creaf.cat>), the first global database of sap flow measurements.

Authors:Victor Granda [aut, cre], Rafael Poyatos [aut], Victor Flo [aut], Jacob Nelson [ctb], Sapfluxnet Core Team [cph]

sapfluxnetr_0.1.4.tar.gz
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sapfluxnetr.pdf |sapfluxnetr.html
sapfluxnetr/json (API)
NEWS

# Install 'sapfluxnetr' in R:
install.packages('sapfluxnetr', repos = c('https://sapfluxnet.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/sapfluxnet/sapfluxnetr/issues

Datasets:

On CRAN:

51 exports 24 stars 2.24 score 46 dependencies 49 scripts 391 downloads

Last updated 2 years agofrom:a09141f653. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 13 2024
R-4.5-winNOTESep 13 2024
R-4.5-linuxNOTESep 13 2024
R-4.4-winNOTESep 13 2024
R-4.4-macNOTESep 13 2024
R-4.3-winNOTESep 13 2024
R-4.3-macNOTESep 13 2024

Exports:%>%daily_metricsdata_coveragedaylight_metricsdescribe_md_variablediurnal_centroidfilter_sites_by_mdget_env_dataget_env_data<-get_env_flagsget_env_flags<-get_env_mdget_env_md<-get_plant_mdget_plant_md<-get_sapf_dataget_sapf_data<-get_sapf_flagsget_sapf_flags<-get_si_codeget_si_code<-get_site_mdget_site_md<-get_solar_timestampget_solar_timestamp<-get_species_mdget_species_md<-get_stand_mdget_stand_md<-get_timestampget_timestamp<-get_timezoneinitializemetrics_tidyfiermidday_metricsmonthly_metricsnightly_metricspredawn_metricsread_sfn_dataread_sfn_metadatasfn_datasfn_data_multisfn_filtersfn_metricssfn_mutatesfn_mutate_atsfn_plotsfn_sites_in_foldersfn_vars_to_filtershowsummarise_by_period

Dependencies:assertthatclicodetoolscolorspacecpp11digestdplyrfansifarverfurrrfuturegenericsggplot2globalsgluegtableisobandlabelinglatticelifecyclelistenvlubridatemagrittrMASSMatrixmgcvmunsellnlmeparallellypillarpkgconfigpurrrR6RColorBrewerrlangscalesstringistringrtibbletidyrtidyselecttimechangeutf8vctrsviridisLitewithr

Custom aggregation

Rendered fromcustom-aggregation.Rmdusingknitr::rmarkdownon Sep 13 2024.

Last update: 2021-11-19
Started: 2018-04-05

Data Flags

Rendered fromdata-flags.Rmdusingknitr::rmarkdownon Sep 13 2024.

Last update: 2021-11-19
Started: 2018-04-05

Memory and Parallelization

Rendered frommemory-and-parallelization.Rmdusingknitr::rmarkdownon Sep 13 2024.

Last update: 2021-11-19
Started: 2018-08-27

Metadata and Data units

Rendered frommetadata-and-data-units.Rmdusingknitr::rmarkdownon Sep 13 2024.

Last update: 2021-11-19
Started: 2018-11-18

sapfluxnetr (Not So) Quick Guide

Rendered fromsapfluxnetr-quick-guide.Rmdusingknitr::rmarkdownon Sep 13 2024.

Last update: 2021-11-19
Started: 2018-04-05

sfn_data classes

Rendered fromsfn-data-classes.Rmdusingknitr::rmarkdownon Sep 13 2024.

Last update: 2023-01-24
Started: 2018-04-05

Readme and manuals

Help Manual

Help pageTopics
Reexporting the pipe operator%>%
ARG_MAZ sapfluxnet siteARG_MAZ
ARG_TRE sapfluxnet siteARG_TRE
AUS_CAN_ST2_MIX sapfluxnet siteAUS_CAN_ST2_MIX
data coveragedata_coverage
Detailed description of metadata variablesdescribe_md_variable
Diurnal centroid calculationdiurnal_centroid
Filter the sites by metadata variable valuesfilter_sites_by_md
get the timezone of the siteget_timezone
Initialize method for sfn_data multiinitialize,sfn_data_multi-method
Initialize method for sfn_datainitialize,sfn_data-method
Complete metrics wrappersdaily_metrics daylight_metrics metrics midday_metrics monthly_metrics nightly_metrics predawn_metrics
Build a tidy data frame from the metrics results nested listmetrics_tidyfier
Normalized diurnal centroid calculationnorm_diurnal_centroid
Read sfn_data from diskread_sfn_data
Read and combine all metadataread_sfn_metadata
Validity method for sfn_data_multi classsfn_data_multi_validity
S4 class for sapfluxnet multi-site datasfn_data_multi sfn_data_multi-class
Validity method for sfn_data classsfn_data_validity
S4 class for sapfluxnet site datasfn_data sfn_data-class
Filter sfn_data by variable/s valuesfn_filter
sfn_data custom get genericsget_env_data get_env_flags get_env_md get_plant_md get_sapf_data get_sapf_flags get_site_md get_si_code get_solar_timestamp get_species_md get_stand_md get_timestamp sfn_get_generics
sfn_data get methodsget_env_data,sfn_data-method get_env_flags,sfn_data-method get_env_md,sfn_data-method get_plant_md,sfn_data-method get_sapf_data,sfn_data-method get_sapf_flags,sfn_data-method get_site_md,sfn_data-method get_si_code,sfn_data-method get_solar_timestamp,sfn_data-method get_species_md,sfn_data-method get_stand_md,sfn_data-method get_timestamp,sfn_data-method sfn_get_methods
sfn_metadata cache file for example data (ARG_MAZ, ARG_TRE and AUS_CAN_ST2_MIX)sfn_metadata_ex
Metrics summary functionsfn_metrics
sfn_data_multi get methodsget_env_data,sfn_data_multi-method get_env_flags,sfn_data_multi-method get_env_md,sfn_data_multi-method get_plant_md,sfn_data_multi-method get_sapf_data,sfn_data_multi-method get_sapf_flags,sfn_data_multi-method get_site_md,sfn_data_multi-method get_si_code,sfn_data_multi-method get_solar_timestamp,sfn_data_multi-method get_species_md,sfn_data_multi-method get_stand_md,sfn_data_multi-method get_timestamp,sfn_data_multi-method sfn_multi_get_methods
Mutate variables by functionsfn_mutate
Mutate selected columns by functionsfn_mutate_at
plot method for sfn_data classsfn_plot
sfn_data replacement genericsget_env_data<- get_env_flags<- get_env_md<- get_plant_md<- get_sapf_data<- get_sapf_flags<- get_site_md<- get_si_code<- get_solar_timestamp<- get_species_md<- get_stand_md<- get_timestamp<- sfn_replacement_generics
sfn_data replacement methodsget_env_data<-,sfn_data-method get_env_flags<-,sfn_data-method get_env_md<-,sfn_data-method get_plant_md<-,sfn_data-method get_sapf_data<-,sfn_data-method get_sapf_flags<-,sfn_data-method get_site_md<-,sfn_data-method get_si_code<-,sfn_data-method get_solar_timestamp<-,sfn_data-method get_species_md<-,sfn_data-method get_stand_md<-,sfn_data-method get_timestamp<-,sfn_data-method sfn_replacement_methods
list available sites in a db foldersfn_sites_in_folder
List all variables that can be used to filter sitessfn_vars_to_filter
Show method for sfn_data_multishow,sfn_data_multi-method
Show method for sfn_datashow,sfn_data-method
Summaries by periodsummarise_by_period